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Publications
2022
Peixoto, D., Torreblanca, A., Pereira, S., Vieira, M.N., Varo, I. (2022). Effect of short-term exposure to fluorescent red polymer microspheres on Artemia franciscana nauplii and juveniles. Environmental Science and Pollution Research (29). 6080-6092. DOI: 10.1007/s11356-021-15992-y
Massimo, M., Volpatti, D., Galeotti, M., Bron, J.E., Beraldo, P. (2022). News Insights into the Host-Parasite Interactions of Amyloodiniosis in European Sea Bass: A Multi-Modal Approach. Pathogens 11(1), 62. DOI: 10.3390/pathogens11010062
2021
Özgür, M.E., Erdoğan, S., Rašković, B., Fazekas, G., Ljubobratovic, U. (2021) Mid-autumn spermiation in outdoor-cultured pikeperch (Sander lucioperca) using different gonadoliberin application strategies. Aquaculture Reports, 21 (100891). DOI: 10.1016/j.aqrep.2021.100891
Yildiz, H.Y., Chatzifotis, S., Anastasiadis, P., Parisi, G., Papandroulakis, N. (2021). Testing of the Salmon Welfare Index Model (SWIM 1.0) as a computational welfare assessment for sea-caged European sea bass. Italian Journal of Animal Science, 20:1, 1423-1430. DOI: 10.1080/1828051X.2021.1961106
Lukić, J., Stanisavljević, N., Vukotić, G., Terzić-Vidojević, A., Begović, J., Golić, N., Ljubobratović, U. (2021). Enrichment of Larval Fish Feed with Free Amino Acids and Proteins by Coating with Lactobacillus paracasei subsp. paracasei BGHN14 Homogenate. Turkish Journal of Fisheries and Aquatic Sciences, 21, 569-573. http://doi.org/10.4194/1303-2712-v21_11_05
Tran, H.Q., Prokesova, M., Zare, M., Gebauer, T., Elia, A.C., Colombino, E., Ferrocino, I., Caimi, C., Gai, F., Gasco, L., Stejskal, V. (2021). How Does Pikeperch Sander lucioperca Respond to Dietary Insect Meal Hermetia illucens? Investigation on Gut Microbiota, Histomorphology, and Antioxidant Biomarkers. Frontiers in Marine Science (8:680942). DOI: 10.3389/fmars.2021.680942
Ljubobratović, U., Fazekas, G., Koljukaj, A., Ristović, T., Vass, V., Ardó, L., Stanisavljević, N., Vukotić, G., Pešić, M., Milinčić, D., Kostić, A., Lukić, J. (2021). Pike-perch larvae growth in response to administration of lactobacilli-enriched inert feed during first feeding. Aquaculture, 542, 736901. https://doi.org/10.1016/j.aquaculture.2021.736901
Rosell-Moll, E., Piazzon, M.C., Sosa, J., Ferrer, M.A., Cabruja, E., Vega, A., Calduch-Giner, J.A., Sitjà-Bobadilla, A., Lozano, M., Montiel-Nelson, J.A., Afonso, J.M., Pérez-Sánchez, J. (2021) Use of accelerometer technology for individual tracking of activity patterns, metabolic rates and welfare in farmed gilthead sea bream (Sparus aurata) facing a wide range of stressors. Aquaculture 539. DOI:10.1016/j.aquaculture.2021.736609 Repository: https://digital.csic.es/handle/10261/234654
Basto, A., Calduch-Giner, J., Oliveira, B., Petit, L., Sá, T., Maia, M.R., Fonseca, S.C., Matos, E., Pérez-Sánchez, J., Valente, L.M. (2021) The use of defatted Tenebrio molitor larvae meal as a main protein source is supported in European sea bass (Dicentrarchus labrax) by data on growth performance, lipid metabolism and flesh quality. Frontiers in Physiology 12. DOI:10.3389/fphys.2021.659567
Moroni, F., Naya-Catala, F., Piazzon, C., Rimoldi, S., Calduch-Giner, J., Giardini, A., Martinez, I., Brambilla, F., Perez-Sanchez, J., Terova, G. (2021). The Effects of Nisin-Producing Lactococcus lactis Strain Used as Probiotic on Gilthead Sea Bream (Sparus aurata) Growth, Gut Microbiota, and Transcriptional Response. Front. Mar. Sci. 8:364. DOI: 10.3389/fmars.2021.659519
Moreira, C., Paiola, M., Duflot, A., Varo, I., Sitja-Bobadilla, A., Knigge, T., Pinto, P., Monsinjon, T. (2021). The influence of 17β-oestradiol on lymphopoiesis and immune system ontogenesis in juvenile sea bass, Dicentrarchus labrax. Developmental & Comparative Immunology 118;104011. DOI: 10.1016/j.dci.2021.104011. Repository link: https://digital.csic.es/handle/10261/228489
Byadgi, O., Massimo, M., Dirks, R.P., Pallavicini, A., Bron, J.E., Ireland, J.H., Volpatti, D., Galeotti, M., Beraldo, P. (2021) Innate immune-gene expression during experimental amyloodiniosis in European seabass (Dicentrarchus labrax). Veterinary Immunology and Immunopathology 234:110217. DOI: 10.1016/j.vetimm.2021.110217
Franek, R., Kaspar, V. Shah, M.A., Gela, D., Psenicka, M. (2021). Production of common carp donor-derived offspring from goldfish surrogate broodstock. Aquaculture 534: 736252. DOI: 10.1016/j.aquaculture.2020.736252
Gebauer T., Gebauer, R., Palinska-Zarska, K., Císar, P., Movchan, O., Tomasek, O., Prokesova, M., Matousek, J., Hliwa, P., Krol, J., Zarski, D., Rebl, A., Stejskal, V. (2021). Assessment of behavioural and physiological traits as indicators of suitability for European perch aquaculture. Aquaculture 544:737048. DOI: 10.1016/j.aquaculture.2021.737048
2020
Rodde, C., Vandeputte, M., Allal, F., Besson, M., Clota, F., Vergnet, A., Benzie, J.A.H., de Verdal, H. (2020). Population, Temperature and Feeding Rate Effects on Individual Feed Efficiency in European Sea Bass (Dicentrarchus labrax). Front. Mar. Sci. DOI: 10.3389/fmars.2020.578976
Rodde, C., de Verdal, H., Lefebvre, S., Menniti, C., Vandeputte, M., Clota, F., Allal, F., McKenzie, D.J., Benzie, J.A.H., Nahon, S. (2020). Variations in isotope incorporation rates and trophic discrimination factors of carbon and nitrogen stable isotopes in scales from three European sea bass (Dicentrarchus labrax) populations. Journal of Experimental Marine Biology and Ecology 533 (151468). DOI:10.1016/j.jembe.2020.151468
Betancor, M.B., Sprague, M., Ortega, A., de la Gandara, F., Tocher, D.R., Ruth, R., Perkins, E., Mourente, G. (2020). Central and peripheral clocks in Atlantic bluefin tuna (Thunnus thynnus, L.): Daily rhythmicity of hepatic lipid metabolism and digestive genes. Aquaculture 523: 735220. DOI: 10.1016/j.aquaculture.2020.735220 Repository link: http://www.repositorio.ieo.es/e-ieo/handle/10508/11459
Lallias, D., Bernard, M., Ciobotaru, C., Dechamp, N., Labbe, L., Goardon, L., Le Calvez, J-M., Bideau, M., Fricot, A., Prezelin, A., Charles, M., Moroldo, M., Cousin, X., Bouchez, O., Roulet, A., Quillet, E., Dupont-Nivet, M. (2020). Sources of variation of DNA methylation in rainbow trout: combined effects of temperature and genetic background. Epigenetics. DOI:10.1080/15592294.2020.1834924. Repository link: https://hal.inrae.fr/hal-03003559
Schraml, Rudolf & Hofbauer, Heinz & Jalilian, Ehsaneddin & Bekkozhayeva, Dinara & Saberioon, Mehdi & Cisar, Petr & Uhl, Andreas. (2020). Towards fish individuality-based aquaculture. IEEE Transactions on Industrial Informatics. PP. DOI:10.1109/TII.2020.3006933.
Papácek, S., Petera, K., Císar, P., Stejskal, V., Saberioon, M. (2020). Experimental & Computational Fluid Dynamics Study of the Suitability of Different Solid Feed Pellets for Aquaculture Systems. Appl. Sci. 10(19): 6954. DOI: 10.3390/app10196954
Fjelldal, P.G., Hansen, T.J., Wargelius, A., Ayllon, F., Glover, K.A., Schulz, R.W., Fraser, T.W.K. (2020). Development of supermale and all-male Atlantic salmon to research the vgll3 allele - puberty link. BMC Genetics 21:123. DOI:10.1186/s12863-020-00927-2
Hao, R., Pan, J., Tilami, S.K., Shah, B.R., Mráz, J. (2020). Post‐mortem quality changes of common carp (Cyprinus carpio ) during chilled storage from two culture systems. J Sci Food Agric (details pending). DOI:10.1002/jsfa.10618 Repository link coming soon.
Hansen, T.J., Penman, D., Glover, K.A., Fraser, T.W.K., Vågseth, T., Thorsen, A., Sørvik, A.G.E., Fjelldal, P.G. (2020). Production and verification of the first Atlantic salmon (Salmo salar L.) clonal lines. BMC Genet 21: 71. DOI:10.1186/s12863-020-00878-8
Ferrer, M.A., Calduch-Giner, J.A., Díaz, M., Sosa, J., Rosell-Moll, E., Santana Abril, J., Santana Sosa, G., Bautista Delgado, T., Carmona, C., Martos-Sitcha, J.A., Cabruja, E., Afonso, J.M., Vega, A., Lozano, M., Montiel-Nelson, J.A., Pérez-Sánchez, J. (2020). From operculum and body tail movements to different coupling of physical activity and respiratory frequency in farmed gilthead sea bream and European sea bass. Insights on aquaculture biosensing. Computers and Electronics in Agriculture. 175:105531. DOI: 10.1016/j.compag.2020.105531 Repository link: https://digital.csic.es/handle/10261/213802
Nácher-Mestre, J., Beltrán, E., Strachan, F., Dick, J.R., Pérez-Sánchez, J., Berntssen, M.H.G., Tocher, D.R. (2020). No transfer of the non-regulated mycotoxins, beauvericin and enniatins, from feeds to farmed fish reared on plant-based diets. Food Chemistry. 323:126773. DOI:10.1016/j.foodchem.2020.126773 Repository link: https://digital.csic.es/handle/10261/213187
Baekelandt, S., Milla, S., Cornet, V., Flamion, E., Ledore, Y., Redivo, B., Antipine, S., Mandiki, S.N.M., Houndji, A., El Kertaoui, N., Kestemont, P. (2020). Seasonal simulated photoperiods influence melatonin release and immune markers of pike perch Sander lucioperca. Scientific Reports. 10:2650. DOI: 10.1038/s41598-020-59568-1
Mes, D., Palstra, A.P., Henkel, C.V., Mayer, I., Vindas, M.A. (2020). Swimming exercise enhances brain plasticity in fish. Royal Society Open Science. 7:1. DOI: 10.1098/rsos.191640
Panettieri, V., Chatzifotis, S., Messina, CM., Olivotto, I., Manuguerra, S., Randazzo, B., Ariano, A., Bovera, F., Santulli, A., Severino, L., Piccolo, G. (2020). Honey Bee Pollen in Meagre (Argyrosomus regius) Juvenile Diets: Effects on Growth, Diet Digestibility, Intestinal Traits, and Biochemical Markers Related to Health and Stress. Animals 10(20): 231. DOI: 10.3390/ani10020231
Lukic, J., Stanisavljevic, N., Vukotic, G., Kosanovic, D., Terzic-Vidojevic, A., Begovic, J., Golic, N., Jeney, G., Ljubobratovic, U. (2020). Lactobacillus salivarius BGHO1 and Lactobacillus reuteri BGGO6-55 modify nutritive profile of Artemia franciscana nauplii in a strain ratio, dose and application timing-dependent manner. Animal Feed Science and Technology 259: 114356. DOI: 10.1016/j.anifeedsci.2019.114356
Dambrine, C, Huret, M, Woillez, M, Pecquerie, L., Allal, F., Servili, A., dePontual, H. (2020). Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay – English Channel area. Ecological Modelling. 423. DOI:10.1016/j.ecolmodel.2020.109007
Kruusmaa, M., Gkliva, R., Tuhtan, J.A., Tuvikene, A., Alfredsen, J.A. (2020). Salmon behavioural response to robots in an aquaculture sea cage. R. Soc. open sci. 7191220. DOI:10.1098/rsos.191220
Nousias, O., Tsakogiannis, A., Duncan, N., Villa, J., Tzokas, K., Estevez, A., Chatziplis, D., Tsigenopoulos, C.S. (2020). Parentage assignment, estimates of heritability and genetic correlation for growth-related traits in meagre Argyrosomus regius. Aquaculture 518:734663. DOI:_10.1016/j.aquaculture.2019.734663 ; Repository link: https://www.researchgate.net/publication/337016277_Parentage_assignment_estimates_of_heritability_and_genetic_correlation_for_growth-related_traits_in_meagre_Argyrosomus_regius
Ljubobratovic, U., Kosanovic, D., Demény, F.Z., Krajcsovics, A., Vukotic, G., Stanisavljevic, N., Golic, N., Jeney, G., Lukic, J. (2020). The effect of live and inert feed treatment with lactobacilli on weaning success in intensively reared pike-perch larvae. Aquaculture 516:734608. https://doi.org/10.1016/j.aquaculture.2019.734608
Monikh, F.A., Chupani, L., Smerkova, K., Bosker, T., Cizar, P., Krzyzanek, V., Richtera, L., Franek, R., Zuskova, E., Skoupy, R., Darbha, G.K., Vijver, M., Valsami-Jones, E., Peijnenburg, W., (2020). Engineered nanoselenium supplemented fish diet: toxicity comparison with ionic selenium and stability against particle dissolution, aggregation and release. Environ. Sci.:Nano 7; 2325-2336. DOI: 10.1039/D0EN00240B
Loi, B, Papadakis, I.E., Leggieri, F., Papiol, G.G., Vallainc, D. (2020). Ontogeny of the digestive system and eye of reared flathead grey mullet, Mugil cephalus (Linnaeus, 1758), and evaluation of lipid deposition in the liver according to the feeding protocol. Aquaculture 526: 735386. DOI: 10.1016/j.aquaculture.2020.735386
Hao, Ruoyi & Pan, Jinfeng & Khalili Tilami, Sarvenaz & Shah, Bakht & Mraz, Jan. (2020). Post‐mortem quality changes of common carp (Cyprinus carpio) during chilled storage from two culture systems. Journal of the Science of Food and Agriculture. 101. DOI:10.1002/jsfa.10618.
Huyben, D., Rimoldi, S., Ceccotti, C., Montero, D., Betancor, M., Iannini, F., Terova, G. (2020). Effect of dietary oil from Camelina sativa on the growth performance, fillet fatty acid profile and gut microbiome of gilthead Sea bream (Sparus aurata). PeerJ. 8 e-10430. DOI: 10.7717/peerj.10430
Betancor, M.B., MacEwan, M.Sprague, X.Gong, D.Montero, L.Han, J.A.Napier, F.Norambuena, M.Izquierdo, D.R.Tocher. (2020). Oil from transgenic Camelina sativa as a source of EPA and DHA in feed for European sea bass (Dicentrarchus labrax L.). Aquaculture 530:735759. DOI: 10.1016/j.aquaculture.2020.735759
Ordóñez-Grande, B., Guerreiro, P.M., Sanahuja, I., Fernández-Alacid, L., Ibarz, A. (2020). Evaluation of an Acute Osmotic Stress in European Sea Bass via Skin Mucus Biomarkers. Animals 10:1546. DOI: 10.3390/ani10091546
Garcia de la serrana, D., Pérez, M., Nande, M., Hernández-Urcera, J., Pérez, E., Coll-Lladó, C., Hollenbeck, C. (2020). Regulation of growth-related genes by nutrition in paralarvae of the common octopus (Octopus vulgaris). Gene 747:144670. DOI:10.1016/j.gene.2020.144670 .Repository link: http://www.repositorio.ieo.es/e-ieo/handle/10508/11502
2019
Kalinowski, C.T., Larroquet, L., Véron, V., Robaina, L., Izquierdo, M.S., Panserat, S., Kaushik, S., Fontagné-Dicharry, S., 2019. Influence of dietary astaxanthin on the hepatic oxidative stress response caused by episodic hyperoxia in rainbow trout. Antioxidants 8(12): 626. DOI:10.3390/antiox8120626
Sprague, M., Xu, G., Betancor, M.B., Olsen, R.E., Torrissen, O., Glencross, B.D., Tocher, D.R. (2019). Endogenous production of n-3 long-chain PUFA from first feeding and the influence of dietary linoleic acid and the α-linolenic:linoleic ratio in Atlantic salmon (Salmo salar). British Journal of Nutrition 122(10): 1091-1102. DOI:10.1017/S0007114519001946
Ruiz, M.A., Betancor, M.B., Robaina, L., Montero, D., Hernández-Cruz, C.M., Izquierdo, M.S., Rosenlund, G., Fontanillas, R., Caballero, M.J. (2019). Dietary combination of vitamin E, C and K affects growth, antioxidant activity, and the incidence of systemic granulomatosis in meagre (Argyrosomus regius). Aquaculture 498: 606-620. DOI:10.1016/j.aquaculture.2018.08.078. Repository link: https://dspace.stir.ac.uk/handle/1893/27783#.Xt9tIlVKiUk
Ruiz, M.A., Hernández-Cruz, C.M., Caballero, M.J., Fernández-Palacios, H., Saleh, R., Izquierdo, M.S., Betancor, M.B. (2019). Incidence of systemic granulomatosis is modulated by the dietary supplementation of vitamin E and C in meagre (Argyrosomus regius) larvae fed inert microdiets. Aquaculture 506: 139-147. DOI:10.1111/are.13896. Repository link: https://dspace.stir.ac.uk/handle/1893/28177#.Xt9wLlVKiUk
Torno, C., Staats, S., Fickler, A., de Pascual-Teresa, S., Izquierdo, M.S., Rimbach, G., Schulz, C. (2019). Combined effects of nutritional, biochemical and environmental stimuli on growth performance and fatty acid composition of gilthead sea bream (Sparus aurata). PLoS ONE 14(5): e0216611. DOI: 10.1371/journal.pone.0216611
Toomey, L., Blaha, M., Mauduit, E., Vanina, T., Baratcabal, M., Ledore, Y., Vesala, S., Fontaine, P., Pasquet, A., Lecocq, T. (2019). When behavioural geographic differentiation matters: inter-populational comparison of aggressiveness and group structure in the European perch. Aquaculture International. 27:1177–1191. DOI:10.1007/s10499-019-00343-z ; Repository link: https://hal.archives-ouvertes.fr/hal-01989468
Saberioon, M., Cisar, P., Labbe, L., Soucek, P., Pelissier, P. (2019). Spectral imaging application to discriminate different diets of live rainbow trout (Oncorhynchus mykiss). Computers and Electronics in Agriculture. 165:104949. DOI: 10.1016/j.compag.2019.104949 ; Repository link: https://www.researchgate.net/publication/335241058_Spectral_imaging_application_to_discriminate_different_diets_of_live_rainbow_trout_Oncorhynchus_mykiss
Novak, A., Cisar, P., Bruneau, M., Lotton, P., Simon, L. (2019). Localization of sound-producing fish in a water-filled tank. The Journal of the Acoustical Society of America. 146:4842. DOI: 10.1121/1.5138607
Franek, R., Tichopad, T., Steinbach, C., Xie, X., Lujic, J., Marinovic, Z., Horvath, A., Kaspar, V., Psenicka, M. (2019). Preservation of female genetic resources of common carp through oogonial stem cell manipulation. Cryobiology. 87: 78-85. DOI: 10.1016/j.cryobiol.2019.01.016
Franek, R., Baloch, A.R., Kaspar, V., Saito, T., Fujimoto, T., Arai., Psenicka., M. (2019) Isogenic lines in fish – a critical review. Reviews in Aquaculture. 1-23. DOI:10.1111/raq.12389
Franek, R., Marinovic, Z., Lujic, J., Urbanyi, B., Fucikova, M., Kaspar, V., Psenicka, M., Horvath, A. (2019). Cryopreservation and transplantation of common carp spermatogonia. PLoS ONE 14(4): e0205481. DOI:10.1371/journal.pone.0205481
Sitja-Bobadilla, A., Gil-Solsona, R., Estensoro, I., Piazzon, Carla., Martos-Sitcha, JA., Picard-Sánchez, A., Fuentes, J., Vicente Sancho, J., Calduch‑Giner, JA., Hernández, F., Pérez‑Sánchez, J. (2019). Disruption of gut integrity and permeability contributes to enteritis in a fish-parasite model:a story told from serum metabolomics. Parasites & Vectors. 12:486. DOI:10.1186/s13071-019-3746-7
Forner-Piquer, I., Fakriadis, I., Mylonas, CC., Piscitelli, F., Di Marzo, V., Maradonna, F., Calduch-Giner, J., Pérez-Sánchez, J., Carnevali, O. (2019). Effects of dietary bisphenol A on the reproductive function of gilthead sea bream (Sparus aurata) testes. International Journal of Molecular Sciences. 20:5003. DOI:10.3390/ijms20205003
Peixoto, MJ., Ferraz, R., Magnoni, LJ., Pereira, R., Gonçalves, JF., Calduch-Giner, J., Pérez-Sánchez, J., Rodrigo, O. Protective effects of seaweed supplemented diet on antioxidant and immune responses in European seabass (Dicentrarchus labrax) subjected to bacterial infection. (2019). Scientific Reports. 9:16134. DOI:10.1038/s41598-019-52693-6
Pérez-Sánchez, J., Naya-Català, F., Soriano, B., Piazzon, MC., Hafez, A., Gabaldón, T., Llorens, C., Sitjà-Bobadilla, A., Calduch-Giner, JA. (2019) Genome Sequencing and Transcriptome Analysis Reveal Recent Species-specific Gene Duplications in the Plastic Gilthead Sea Bream (Sparus aurata). Frontiers in Marine Science. DOI:10.3389/fmars.2019.00760
Forner-Piquer, I., Mylonas C.C., Fakriadis, I., Papadaki, M., Piscitelli, F., Di Marzo, V., Calduch-Giner, J., Pérez-Sánchez, J., Carnevali, O. (2019). Effects of diisononyl phthalate (DiNP) on the endocannabinoid and reproductive systems of male gilthead sea bream (Sparus aurata) during the spawning season. Archives of Toxicology. 93, 727-741. DOI:10.1007/s00204-018-2378-6
Martos-Sitcha, J.A., Sosa, J., Ramos-Valido, D., Bravo, F.J., Carmona-Duarte, C., Gomes, H.L., Calduch-Giner, J.À., Cabruja, E., Vega, A., Ferrer, M.Á., Lozano, M., Montiel-Nelson, J.A., Afonso, J.M., Pérez-Sánchez, J. (2019). Ultra-low power sensor devices for monitoring physical activity and respiratory frequency in farmed fish. Frontiers in Physiology. 10, 667. DOI:10.3389/fphys.2019.00667
Martos-Sitcha J.A., Simó-Mirabet, P., de las Heras, V., Calduch-Giner, J.À., and Pérez-Sánchez, J. (2019). Tissue-Specific Orchestration of Gilthead Sea Bream Resilience to Hypoxia and High Stocking Density. Frontiers in Physiology. 10, 840. DOI: 10.3389/fphys.2019.00840
Song, Y., Alami-Durante, H., Skiba-Cassy, S., Marandel, L., Panserat, S. (2019). Higher glycolytic capacities in muscle of carnivorous rainbow trout juveniles after dietary carbohydrate stimulus at first feeding. BMC Nutrition & Metabolism. 16 :77. DOI:10.1186/s12986-019-0408-x
Song, X., Marandel, L., Skiba-Cassy, S., Corraze, G., Dupont-Nivet, M., Quillet, E., Geurden, I., Panserat, S. (2018). Regulation by dietary carbohydrates of intermediary metabolism in liver and muscle of two isogenic lines of rainbow trout. Front. Physiol. 9:1579. DOI:10.3389/fphys.2018.01579
Lukic, J., Vukotic, G., Stanisavljevic, N., Kosanovic, D., Molnar, Z., Begovic, J., Terzic-Vidojevic, A., Jeney, G., Ljubobratovic, U. (2019). Solid state treatment with Lactobacillus paracasei subsp. paracasei BGHN14 and Lactobacillus rhamnosus BGT10 improves nutrient bioavailability in granular fish feed. PLoS ONE 14(7): e0219558. https://doi.org/10.1371/journal.pone.0219558
2018
Riesco, M., Félix, F., Matias, D., Joaquim, S., Suquet, M. and Cabrita, E. (2018). Comparative study on cellular and molecular responses in oyster sperm revealed different susceptibilities to cryopreservation. Aquaculture, 498, pp.223-229. DOI: https://doi.org/10.1016/j.aquaculture.2018.08.049
Veron, V., Marandel, L., Liu, J. et al. (2018) DNA methylation of the promoter region of bnip3 and bnip3l genes induced by metabolic programming. BMC Genomics, 19: 677. DOI: 10.1186/s12864-018-5048-4
Saberioon, M., Císař, P., Labbé, L., Souček, P., Pelissier, P. and Kerneis, T. (2018). Comparative Performance Analysis of Support Vector Machine, Random Forest, Logistic Regression and k-Nearest Neighbours in Rainbow Trout (Oncorhynchus Mykiss) Classification Using Image-Based Features. Sensors, 18(4), p.1027. DOI: [10.3390/s18041027]
Saberioon, M. and Císař, P. (2018). Automated within tank fish mass estimation using infrared reflection system. Computers and Electronics in Agriculture, 150, pp.484-492. DOI: https://doi.org/10.1016/j.compag.2018.05.025
Maouche, A., Curran, E., Goupil, AS., Sambroni, E., Bellaiche, J., Le Gac, F., (2018) New insights into the evolution, hormonal regulation, and spatiotemporal expression profiles of genes involved in the Gfra1/Gdnf and Kit/Kitlg regulatory pathways in rainbow trout testis. Fish Physiology and Biochemistry. DOI: https://doi.org/10.1007/s10695-018-0547-4.
Marcos-López, M., Calduch-Giner, J.A., Mirimin, L., MacCarthy, E., Rodger, H.D., O'Connor, I., Sitjà-Bobadilla, A., Pérez-Sánchez, J., Piazzon, M.C. (2018) Gene expression analysis of Atlantic salmon gills reveals mucin 5 and interleukin 4/13 as key molecules during amoebic gill disease. Scientific Reports 8:13689 DOI: https://doi.org/10.1038/s41598-018-32019-8
Forner-Piquer, I., Mylonas, C.C., Calduch-Giner, J., Maradonna, F., Gioacchini, G., Allarà, M., Piscitelli, F., Di Marzo, V., Pérez-Sánchez, J., Carnevali, O. (2018) Endocrine disruptors in the diet of male Sparus aurata: Modulation of the endocannabinoid system at the hepatic and central level by Di-isononyl phthalate and Bisphenol A. Environment International. 119, 54-65. DOI: https://doi.org/10.1016/j.envint.2018.06.011.
Hu, H., Liu, J., Plagnes-Juan, E., Herman, A., Leguen, I., Goardon, L., Geurden, I., Panserat, S., Marandel, L. (2018). Programming of the glucose metabolism in rainbow trout juveniles after chronic hypoxia at hatching stage combined with a high dietary carbohydrate: Protein ratios intake at first-feeding. Aquaculture. 488, 1-8. DOI: https://doi.org/10.1016/j.aquaculture.2018.01.015.
Pérez-Sánchez, J., Kaushik, S., Corraze, G., Izquierdo, M., Torrecillas, S., Sitjà-Bobadilla, A., Estensoro, I., Piazzon, M.C., Conceição, L.E.C., Calduch-Giner, J., Nácher-Mestre, J., Afonso López, J.M. (2018). Fish Nutrition Research: Recent Advances and Perspectives. CSIC: Spain. Available at: http://nutrigroup-iats.org/files/Training_course_on_fish_nutrition_research.pdf.
Song, X., Marandel, L., Dupont-Nivet, M., Quillet, E., Geurden, I., Panserat, S. (2018) Hepatic glucose metabolic responses to digestible dietary carbohydrates in two isogenic lines of rainbow trout. Biol Open. 7, bio032896. DOI: https://doi.org/10.1242/bio.032896.
2017
Glover, K.A., Hansen, T., Besnier, F., Solberg, M.F., Fjelldal, P.G., Eide, A.G.S., Dalvin, S., Nilsen, F. (2017). Cloned and outbred Atlantic salmon display equal parasite dispersion when infected with the salmon louse. Aquaculture. 480. DOI: https://doi.org/10.1016/j.aquaculture.2017.08.008.
Liu, J., Dias, K., Plagnes-Juan, E., Veron, V., Panserat, S., Marandel, L. (2017). Long-term programming effect of embryonic hypoxia exposure and high-carbohydrate diet at first feeding on glucose metabolism in juvenile rainbow trout. J. Exp. Biol. 220, 3686–3694. DOI: http://dx.doi.org/10.1242/jeb.161406.
Liu, J., Plagnes-Juan, E.,Geurden, I., Panserat, S., Marandel, L. (2017). Exposure to an acute hypoxic stimulus during early life affects the expression of glucose metabolism-related genes at first-feeding in trout. Scientific Reports. 7, 363. DOI: 10.1038/s41598-017-00458-4.
Ljubobratovic U, Kosanovic D, Vukotic G, Molnar Z, Stanisavljevic N, Ristovic T, Peter G, Lukic J, Jeney G (2017). Supplementation of lactobacilli improves growth, regulates microbiota composition and suppresses skeletal anomalies in juvenile pike-perch (Sander lucioperca) reared in recirculating aquaculture system (RAS): a pilot study. Research in Veterinary Science. 115: 451-462. DOI: https://doi.org/10.1016/j.rvsc.2017.07.018.
Magnoni, L., Martos-Sitcha J.A., Queiroz, A., Calduch-Giner, J.A., Magalhães Gonçalves, J.F., Rocha, C.M.R., Abreu, H.T., Schrama, J.W., Ozorio, R.O.A., Pérez-Sánchez, J. (2017). Dietary supplementation of heat-treated Gracilaria and Ulva seaweeds enhanced acute hypoxia tolerance in gilthead sea bream (Sparus aurata). Biology Open. 6(6). DOI: 10.1242/bio.024299.
Martos-Sitcha JA, Bermejo-Nogales A, Calduch-Giner JA, Pérez-Sánchez J (2017). Gene expression profiling of whole blood cells supports a more efficient mitochondrial respiration in hypoxia-challenged gilthead sea bream (Sparus aurata). Frontiers in Zoology. 14: 34. DOI: https://doi.org/10.1186/s12983-017-0220-2.
2016
Estensoro I, Ballester-Lozano G, Benedito-Palos L, Grammes F, Martos-Sitcha JA, Mydland L-T, Calduch-Giner JA, Fuentes J, Karalazos V, Ortiz A, Øverland M, Sitjà-Bobadilla A, Pérez-Sánchez J (2016). Dietary Butyrate Helps to Restore the Intestinal Status of a Marine Teleost (Sparus aurata) Fed Extreme Diets Low in Fish Meal and Fish Oil. PLOSOne, 7(1). DOI: doi:10.1371/journal.pone.0166564.
- To read more about the research, please have a look at "Super Additive Leading the Way To More Sustainable Aquaculture Feed" in the News section.
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Innovative Outputs
A number of Project Catalogues have been developed for impactful, innovative AQUAEXCEL2020 project outputs. These OUTPUTS were selected by the Industry Research Advisory Panel as being particularly relevant for the European aquaculture industry. The project catalogues contain information on the research, potential impact, knowledge need, end-users, contact information for the researcher and more.
More project catalogues will be uploaded to the website over the coming months as further innovative OUTPUTS are completed.
Please select a catalogue to access the full two-page version.
FEED AND NUTRITION
LSAqua Protein Source for Rainbow Trout Diets
Effect of black soldier fly meal inclusion on pikeperch
Effect of patented feed with high n-3 PUFA on post-mortem storage stability of common carp
Dietary requirements for essential fatty acids in meagre juveniles
Insect Meal as a Sustainable Feed for Juvenile European Sea Bass
Nutrient and Energy Digestibility of Insect Meal in Sea Bass
Effect of Insect Meal on the Growth of European Sea Bass
Defatted Mealworm (Tenebrio Molitor) as a Sustainable Feed Source for European Sea Bass
A Toolset to Assess Intestinal Health Benefits of Feed Additives
Lactic Acid Bacteria Improve Growth and Reduce Potentially Pathogenic Bacteria Level in Juvenile Pike-Perch
BEHAVIOUR MONITORING AND MODELLING
Effect of a novel underwater robot on fish behaviour and welfare in sea cages
3D Fish - 3D Fish Monitoring System for Aquaculture
AE-FishBIT: A Smart Device for Monitoring Fish Health and Welfare
AquaFishDEB: A Functional Model for Fish Growth, Feed Intake and Waste Production in Aquaculture
A stereoscopic method to measure fish size
HEALTH & WELFARE
Critical thermal limits of bluefin tuna larvae
First estimates of metabolic rate in Atlantic bluefin tuna larvae
Revelation of Key Molecules During Amoebic Gill Disease (AGD) in Atlantic Salmon
Effect of oestrogen on the immune system of sea bass
TECHNOLOGY
Improved sterlet sturgeon sperm cryopreservation procedure
Improving salmon feeding process with the Smart System for Feeding Control (SICA)
Novel sensors to measure distributed flow in offshore aquaculture sea cages
GENETICS
Parentage assignment in meagre
MANAGEMENT PROTOCOLS
Effects of transfer from cages to tanks on European sea bass
Physiological and behavioural effects of handling procedures on Atlantic salmon
Early Life Management Protocol for Optimal Performance of Sea Bream
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Videos
A new video demonstrating how AEFishBIT works from Xènia Pérez Sitjà can be accessed on Vimeo here.
A demo of FishBIT from Xènia Pérez Sitjà can be accessed on Vimeo here.
Click the link above to learn about SINTEF ACE facilities and some of the great TNA projects that were carried out during AQUAEXCEL2020. These facilities will be available for access in AQUAEXCEL3.0.
Click the link above to watch LSAqua protein source for rainbow trout diets. This presentation was given by AQUAEXCEL2020 TNA user Paula Solé Jiménez (LSAqua) at the co-organised AQUAEXCEL2020 / EATiP webinar Aquafeed of the Future on 30 October 2020.
Click the link above to watch a presentation by Asko Ristolainen from Tallinn University of Technology, discussing novel sensors to measure distributed flow in aquaculture sea cages.
Click the link above to watch a presentation by Orestis Stavrakidis-Zachou from the Hellenic Centre for Marine Research, discussing the effects of transfer from cages to tanks on European sea bass.
Click the link above to watch a presentation by Rosa Martinez Álvarez-Castellanos from CTN (Marine Technological Centre), discussing the Smart System for Feeding Control (SICA) to improve the salmon feeding process.
Click the link above to watch a presentation by Asko Ristolainen from Tallinn University of Technology, discussing the effects of a novel underwater robot on fish behaviour and welfare in sea cages.
Click the link above to watch a presentation by Panos G. Kalatzis from University of Copenhagen, discussing the use of bacteriophages as antibacterial agents in aquaculture.
Click the link above to watch a presentation by Trine Ytrestøyl from Nofima, discussing the development of a best practice for handling of Atlantic salmon smolts.
Click the link above to watch a presentation by Costas Tsigenopoulos from Hellenic Centre for Marine Research (HCMR), discussing the evaluation of the genetic variability and reproduction in meagre broodstocks.
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Public Deliverables
D1.4: First Evaluation of the Access Given
D1.5: Final Evaluation of the Access Given
D2.1: Industry and Research Advisory Panel (IRAP)
D2.2: Feedback (brokerage) template
D2.3a: Report on each of the brokerage events
D2.3b: Report on each of the brokerage events
D2.3c: Report on each of the brokerage events
D3.3: Booklet of cryopreservation procedures for the cryobanked species
D3.4: Usable ElLIXIR services, standards for data exchange and data modeling
D3.6: Elixir-DigitalFish case study
D3.7: Elixir-Fish and Chip case study
D4.1: Dissemination and Exploitation plan (DEP)
D4.2: AQUAEXCEL2020 One-Stop-Access Online Portal and general website
D4.4a: Face-to-face Training course 1: Recirculating Aquaculture Systems (RAS) Technology
D4.4b: Face-to-face Training course 2: Recirculating Aquaculture Systems (RAS) Technology
D4.4c: Face-to-face Training course 3: Laboratory Animal Science for Aquatic Research Facilities
D4.4e: Face-to-face Training course 5: Planning and Conducting Experimental Infection Trials in Fish
D4.4f: Face-to-face Training course 6: Fish Nutrition and Feeding
D4.5c: Distance learning Training course 3: Training in the Use of the Fish and Chips Tool
D4.6: Suite of dissemination resources and tools
D5.1: Model development guidelines
D5.2: First prototype models for growth, feed intake and waste production
D5.3 First prototype model on water quality and water temperature for experimental facilities
D5.4: First prototype flow field model established
D5.5: Virtual laboratory version 1
D5.6: Final model for growth, feed consumption and waste production simulation
D5.7: Final model on water quality and water temperature for experimental facilities
D5.8: Final flow field model after testing period
D6.1: Effect of water oxygen level during early life stages in trout
D6.2: Effect of early life oxygen concentration in sea bream
D6.4: Atlantic salmon and sea bass transfer protocols
D6.5: Effect of early life nutrition on experimental outcomes at later life in rainbow trout
D6.6: Sampling procedures for physiological data
D6.8: Early life stage and environment effect on FI
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Repositories
This repository contains data and metadata on isogenic, divergent lines or more generally well characterized fish lines (carp, sea bass, trout, and Atlantic salmon). This data comes from several sources:
i) already published
ii) collected through several initiatives (e.g., sequencing projects)
iii) originated from WP7 and as a result of TNA.
Examples of specific data included are:
1) from the set of INRA trout isogenic lines including from the WP7 additional phenotypic characterization and methylome analysis;
2) from IMR and UoS salmon isogenic lines which includes, production, growth, maturity, survival, methylome sequencing of 2-3 salmon isogenic lines and RAD sequencing studies;
3) from WU and UOS carp isogenic lines, RAD sequencing and meiotic mapping studies;
4) from IFREMER, sea bass data from quantitative traits measurement such as: survival, growth (weight and length), sex-ratio, muscle fat, fasting resistance, disease resistance, stress coping styles, diversity array studies.
To access the repository please click here.